Most genomic evaluation methods have been based on SNP. It has been shown that differences in accuracy of genomic breeding values were small between these methods. The use of a high density chip instead of a medium density one in within breed or multi-breed genomic evaluation leads to relatively small improvements. Haplotypes instead of SNP improve linkage disequilibrium between alleles and potential quantitative trait loci. Here, an extension to haplotypes of GS3, a free selection genomic software developed by Legarra et al. (2013) is proposed.

Pascal Croiseau, Marie-Noelle Fouilloux, David Jonas, Sebastien Fritz, Aurélia Baur, Vincent Ducrocq, Florence Phocas, Didier Boichard

Proceedings of the World Congress on Genetics Applied to Livestock Production, Volume Methods and Tools: Statistical methods - linear and nonlinear models (Posters), , 708, 2014
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